bioimg.exportation

client.bioimg.exportation

Functions

Name	Description
export	The function exports microscopy images from TileDB arrays

export

client.bioimg.exportation.export(
    source,
    output,
    *args,
    access_credentials_name,
    config=None,
    taskgraph_name=None,
    num_batches=None,
    resources=None,
    compute=True,
    mode=Mode.BATCH,
    namespace=None,
    verbose=False,
    output_ext='tiff',
    **kwargs,
)

The function exports microscopy images from TileDB arrays

:param source: uri / iterable of uris of input files If the uri points to a directory of files make sure it ends with a trailing ‘/’ :param output: uri / iterable of uris of input files. If the uri points to a directory of files make sure it ends with a trailing ‘/’ :param config: dict configuration to pass credentials of the destination :param taskgraph_name: Optional name for taskgraph, defaults to None :param num_batches: Number of graph nodes to spawn. Performs it sequentially if default, defaults to 1 :param threads: Number of threads for node side multiprocessing, defaults to 8 :param resources: configuration for node specs e.g. {“cpu”: “8”, “memory”: “4Gi”}, defaults to None :param compute: When True the DAG returned will be computed inside the function otherwise DAG will only be returned. :param mode: By default runs Mode.Batch :param namespace: The namespace where the DAG will run :param verbose: verbose logging, defaults to False :param access_credentials_name: Access Credentials Name (ACN) registered in TileDB Cloud (ARN type) :param output_ext: extension for the output images in tiledb