bioimg.exportation

cloud.bioimg.exportation

Functions

Name	Description
export	The function exports microscopy images from TileDB arrays

export

cloud.bioimg.exportation.export(
    source
    output
    *args
    access_credentials_name
    config=None
    taskgraph_name=None
    num_batches=None
    resources=None
    compute=True
    mode=Mode.BATCH
    namespace=None
    verbose=False
    output_ext='tiff'
    **kwargs
)

The function exports microscopy images from TileDB arrays

Parameters

Name	Type	Description	Default
source	Union[Sequence[str], str]	uri / iterable of uris of input files If the uri points to a directory of files make sure it ends with a trailing ‘/’	required
output	Union[Sequence[str], str]	uri / iterable of uris of input files. If the uri points to a directory of files make sure it ends with a trailing ‘/’	required
config	Optional[Mapping[str, Any]]	dict configuration to pass credentials of the destination	None
taskgraph_name	Optional[str]	Optional name for taskgraph, defaults to None	None
num_batches	Optional[int]	Number of graph nodes to spawn. Performs it sequentially if default, defaults to 1	None
threads		Number of threads for node side multiprocessing, defaults to 8	required
resources	Optional[Mapping[str, Any]]	configuration for node specs e.g. {“cpu”: “8”, “memory”: “4Gi”}, defaults to None	None
compute	bool	When True the DAG returned will be computed inside the function otherwise DAG will only be returned.	True
mode	Optional[Mode]	By default runs Mode.Batch	Mode.BATCH
namespace	Optional[str]	The namespace where the DAG will run	None
verbose	bool	verbose logging, defaults to False	False
access_credentials_name	str	Access Credentials Name (ACN) registered in TileDB Cloud (ARN type)	required
output_ext	str	extension for the output images in tiledb	'tiff'