Single-cell Group

Class for representing the now-deprecated SCGroup object, which has been renamed to SOMA.

Super classes

tiledbsc::TileDBObject -> tiledbsc::TileDBGroup -> tiledbsc::SOMA -> SCGroup

Active bindings

misc

An alias for uns.

Methods

Public methods

• SCGroup$new()

• SCGroup$clone()

Inherited methods

• tiledbsc::TileDBObject$class()
• tiledbsc::TileDBObject$exists()
• tiledbsc::TileDBGroup$add_member()
• tiledbsc::TileDBGroup$add_metadata()
• tiledbsc::TileDBGroup$count_members()
• tiledbsc::TileDBGroup$get_member()
• tiledbsc::TileDBGroup$get_members()
• tiledbsc::TileDBGroup$get_metadata()
• tiledbsc::TileDBGroup$group_exists()
• tiledbsc::TileDBGroup$list_member_uris()
• tiledbsc::TileDBGroup$list_members()
• tiledbsc::TileDBGroup$list_object_uris()
• tiledbsc::TileDBGroup$list_objects()
• tiledbsc::TileDBGroup$print()
• tiledbsc::TileDBGroup$remove_member()
• tiledbsc::TileDBGroup$tiledb_group()
• tiledbsc::SOMA$add_seurat_dimreduction()
• tiledbsc::SOMA$from_seurat_assay()
• tiledbsc::SOMA$get_annotation_matrix_arrays()
• tiledbsc::SOMA$get_annotation_pairwise_matrix_arrays()
• tiledbsc::SOMA$get_seurat_dimreduction()
• tiledbsc::SOMA$get_seurat_dimreductions_list()
• tiledbsc::SOMA$reset_query()
• tiledbsc::SOMA$set_query()
• tiledbsc::SOMA$to_seurat_assay()
• tiledbsc::SOMA$to_seurat_object()
• tiledbsc::SOMA$to_single_cell_experiment()
• tiledbsc::SOMA$to_summarized_experiment()

---

Method new()

Create a new SCGroup.

Usage

SCGroup$new(uri, verbose = TRUE, config = NULL, ctx = NULL)

Arguments

uri

URI of the TileDB group

verbose

Print status messages

config

optional configuration

ctx

optional tiledb context

---

Method clone()

The objects of this class are cloneable with this method.

Usage

SCGroup$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.