## Overview

This vignette discusses different options for installing the TileDB R package.

### CRAN

#### Binaries

The TileDB R package is released via the Comprehensive R Archive Network, or CRAN. CRAN generally provides binaries for the two most widely operating systems, Windows and macOS. So issueing the command

install.packages("tiledb")

will, on those two operating system, default to type="binary" and install a ready-to-run binary package.

#### Source

On other operating systems such as Linux, or by explicitly selecting type="source" on Windows or macOS, an installation from source is attempted when usinginstall.packages(“tiledb”).

On Linux or macOS, this invokes the standard R build process which will rely on configure. If pkg-config is found, it is used to query the system about a possible TileDB installation. If one is found, it used. Otherwise, on all three main operating systems a prebuilt archive with the TileDB Embedded library is downloaded from GitHub and unpacked. Each build of the R package will have one matching build of TileDB Embedded associated with it via file the tools/tiledbVersion.txt specifying a version and release commit sha1. These two values are used to find the corresponding binary artifacts from a release at GitHub.

The location of an existing installed version of TileDB Embedded can also be provided to the configure script which supplies an argument --with-tiledb=PATH. So on the command-line, one could say

R CMD INSTALL --configure-args='--with-tiledb=/some/path' tiledb_*.tar.gz

to pass the configure argument on. From within R, the equivalent command is

install.packages("tiledb", repos=NULL, configure.args="--with-tiledb=/some/path")

Lastly, one can also override the default download location (otherwise inferred via tools/tiledbVersion.txt. The configure script supports an option --with-download=URL so the two calls become, respectively

R CMD INSTALL --configure-args='--with-download=https://some.where.net/file.tgz' tiledb_*.tar.gz

and

install.packages("tiledb_0.11.0.tar.gz", repos=NULL,
configure.args="--with-download=https://some.where.net/file.tgz")

## Conda

Using for example the current condaforge/mambaforge container from the conda-forge project, we can do

mamba install -y r-tiledb                # installs R, tiledb and deps without extra prompt
# ...several lines of installation detail omitted
R
# ... several lines of R startup output omitted
> library(tiledb)`

which installs R, the tiledb package and all respective dependencies.

## Docker

Builds of the TileDB package could also be provided via Docker containers. At present, no official TileDB R containers are provided by TileDB. However, the discussion of installation from source above describes how to create such containers.

## Summary

This note described several installation options for the TileDB R package.